Basic Information
VIS ID
TVIS30012393
Fusion event
HIV-EXOC7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74094500/76098419 (Hg38)
End
74094500/76098419 (Hg38)
Orient
+
Location type
Intronic
Target gene
EXOC7
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-18a-3p ; hsa-mir-331-3p ; hsa-mir-125b-5p ; hsa-mir-3684 ; hsa-mir-655-3p ; hsa-mir-374c-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4777-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-6777-3p ; hsa-mir-483-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-7152-5p ; hsa-mir-3074-5p ; hsa-mir-6888-3p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6868-3p ; hsa-mir-6740-3p ; hsa-mir-627-3p ; hsa-mir-942-5p ; hsa-mir-3120-5p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-1266-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p
Nearest miRNA
hsa-mir-10226/Upstream/343; hsa-mir-1250/Downstream/638031;
Nearest TSS
ENST00000595228/Upstream/3930; ENST00000586627/Downstream/3434;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/20970, chr17-CpG: 33/Downstream/5238
Upstream sequence
agagacggggtttcaccatgttggcaggatggtcttgatctcctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatga
Downstream sequence
gccactgcacctggccTGCCCTGATATCCTTTAACCCAAAGAAGAAACGCTGGGAAGCGGCCTTGGTGACTCCTTTACTTCATGTTCTCTCAAAATTTGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate