Basic Information
VIS ID
TVIS30012402
Fusion event
HIV-MFSD11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74739094/76743012 (Hg38)
End
74739094/76743012 (Hg38)
Orient
-
Location type
Intronic
Target gene
MFSD11
miRNAs that regulate target gene
hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-371a-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6778-3p
Nearest miRNA
hsa-mir-10226/Upstream/6464; hsa-mir-1250/Downstream/346405;
Nearest TSS
ENST00000595228/Upstream/821; ENST00000585958/Downstream/4919;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/4872, chr17-CpG: 254/Downstream/125076
Upstream sequence
CCTTGACAAGGCTTAACAAATGCAAATGTTACATTTTAAAGAGTTGTATATTAAGAAACTAGTGTGTAAGTGAATGATTTTTCAGGAAAGTATGCTAAAG
Downstream sequence
AAAGTATTTGATTAGATGCAGATAACTAAATCATGGATTTTTAGAAACAGATTCTTTAAAATTTAGCTTAAGCTTATTTCCAGGGAGTCATTTCCAGAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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