Basic Information
VIS ID
TVIS30012415
Fusion event
HIV-CYTH1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
76712436/78716354 (Hg38)
End
76712436/78716354 (Hg38)
Orient
+
Location type
Intronic
Target gene
CYTH1
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-34a-5p ; hsa-mir-1827 ; hsa-mir-3940-3p
Nearest miRNA
hsa-mir-10226/Upstream/1319300; hsa-mir-1250/Downstream/990822;
Nearest TSS
ENST00000595228/Upstream/23861; ENST00000587434/Downstream/671;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/213361, chr17-CpG: 155/Downstream/65074
Upstream sequence
tttggggagtgggtctgggaatagagagacaggacatataagcccctgaatacttgctttaaaatacatatatatatgtactatgacaatttgaaaacaa
Downstream sequence
aaGACTAAAAATGTACAACTATGGTCACTAGAAAAGATAGCCCTTCTGTGTCCTTGGAGTCAGACAGAAAACGCTTCTGGCCAATTTGTAGCTAGAATAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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