Basic Information
VIS ID
TVIS30012433
Fusion event
HIV-RPTOR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
78822924/80849124 (Hg38)
End
78822924/80849124 (Hg38)
Orient
+
Location type
Intronic
Target gene
RPTOR
miRNAs that regulate target gene
hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-155-5p
Nearest miRNA
hsa-mir-10226/Upstream/429631; hsa-mir-1250/Downstream/276152;
Nearest TSS
ENST00000595228/Upstream/43492; ENST00000576366/Downstream/73600;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/4228, chr17-CpG: 27/Downstream/8581
Upstream sequence
CAATGGGCGGACCTCCACCTAACACAAAAGTAGGGAAAGATGAAGTGTAATGGGGTATCGGCTTCATTTGACGTACCCCCCGGGAGTGGCTTCTTTCTCG
Downstream sequence
TTAACTCGGCTCACTTCCCCGCGCTTTCTCTTAAAAGCCTTTATTTTTGCCAAAGCCTGGGCCCTGTTATCCTTAAATTATTCTCTAGTGCCTTGGCAAG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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