Basic Information
VIS ID
TVIS30012440
Fusion event
HIV-NARF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80434241/82476365 (Hg38)
End
80434241/82476365 (Hg38)
Orient
-
Location type
Intronic
Target gene
NARF
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-24-3p ; hsa-mir-16-5p ; hsa-mir-423-3p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6086 ; hsa-mir-2467-3p ; hsa-mir-377-5p ; hsa-mir-4487 ; hsa-mir-1827 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-5186 ; hsa-mir-4257 ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-508-5p
Nearest miRNA
hsa-mir-10226/Upstream/239637; hsa-mir-4525/Downstream/191868;
Nearest TSS
ENST00000595228/Upstream/7866; ENST00000584513/Downstream/1559;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/16982, chr17-CpG: 111/Downstream/20411
Upstream sequence
caaagtgctgggattacaggcacttgccaccatgcccggctaatttttgtatttttagtagagacggggttgcaccatgttggccaggccagtctcaaac
Downstream sequence
tcctgacctcaggtgatccgcctgcctcggcctcccaaagtgctgggattacagcagtgagccactgtgcccagcTAACACttttttgtttgtttgtttg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate