Basic Information
VIS ID
TVIS30012445
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
561859/561859 (Hg38)
End
561859/561859 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-8078/Upstream/449520; hsa-mir-1-2/Downstream/3323494;
Nearest TSS
ENST00000575820/Upstream/46565; ENST00000327228/Downstream/18498;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/46382, chr18-CpG: 56/Downstream/18320
Nearby gene
CETN1(No orient, 18484)
Upstream sequence
acatacatggaaaactgatgagaccattcaacctgtggtgctgaagcaattatccatatttaaagaaatgaaaatgtatccctaccttacactattcaag
Downstream sequence
gtaaattgaggaatttatcaattcaagacagattaagggacttaaatgtgaaaggcaaaacctttaaacttttagtatacagtaccttaaagtagggaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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