Basic Information
VIS ID
TVIS30012447
Fusion event
HIV-METTL4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
2552378/2552379 (Hg38)
End
2552378/2552379 (Hg38)
Orient
+
Location type
Intronic
Target gene
METTL4
miRNAs that regulate target gene
hsa-mir-197-3p
Nearest miRNA
hsa-mir-8078/Upstream/2440040; hsa-mir-1-2/Downstream/1332974;
Nearest TSS
ENST00000575820/Upstream/62953; ENST00000575515/Downstream/2313;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1642806, chr18-CpG: 33/Downstream/18908
Upstream sequence
ttatcgccctaagaagtaacataaactaaaaaattaaaaacaaatttaagaatgaattagacaaattcattcataacactttattaaggaaaactagaaa
Downstream sequence
tatcttggcacatatttctaaactttagaatttgatatcaaagaagacaAATATGTTGTCCTTTGGTGTTAACAGAAACAGCCCTGAACTGCTTCTGGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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