Basic Information
VIS ID
TVIS30012460
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21026332/23446368 (Hg38)
End
21026332/23446368 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/512930; hsa-mir-122/Downstream/875307;
Nearest TSS
ENST00000575820/Upstream/8407; ENST00000584960/Downstream/6455;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/8321, chr18-CpG: 43/Downstream/6739
Nearby gene
RIOK3(No orient, 6455)
Upstream sequence
TCCTGCCCCTATGCCTAGTCTTAGGCTGTTCTTCCACCCAAACTAGCGTTACAGCTTCTCCCCAGCGTTCATGACCTACTTTGGTGCCACGCAGCCTTTC
Downstream sequence
CAGATCTCACTACCCCACAATGAATCCTGAAATGTTTGTGTCTATAGCTGTCATTTGGAAATAAATCATGCACTCTTTGAGATAGAGGTGTTGTATTGTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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