VISDB Viral Integration Site DataBase

VIS ID

TVIS30012462

Fusion event

HIV-TTC39C integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q11.2

Reference genome

Start

End

21636639/24056675 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4253 ; hsa-mir-3622b-5p ; hsa-mir-4802-5p ; hsa-mir-6862-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-4655-5p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-497-3p ; hsa-mir-140-3p ; hsa-mir-607 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-196a-3p ; hsa-mir-873-3p ; hsa-mir-4522 ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-759 ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-5586-3p ; hsa-mir-3664-5p ; hsa-mir-4797-5p ; hsa-mir-1273g-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-1-2/Upstream/1123237; hsa-mir-122/Downstream/265000;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/41175, chr18-CpG: 58/Downstream/82223

Upstream sequence

AGGAAATCATCATCAGTCCAATTTTTAATATATTGGAGAGACCTTAAAAAAATTTCCAAGGCAATGTTGGCGAATATCAGAATGAGGATCAGTTGCTTCC

Downstream sequence

TTTCATTCACAACAGGTTTCTACCTGTTGTGACTCATACAGAGAGAAAATTTTAGAGCCGTTTTATTACTGATGGTTCATTTTAAAAAAGCAAATGCAGT