Basic Information
VIS ID
TVIS30012469
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
45694675/48168304 (Hg38)
End
45694675/48168304 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105372104 ; ZBTB7C
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-106b-3p ; hsa-mir-1228-3p ; hsa-mir-8485 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-510-5p
Nearest miRNA
hsa-mir-1-2/Upstream/787739; hsa-mir-122/Downstream/502296;
Nearest TSS
ENST00000575820/Upstream/2738; ENST00000591412/Downstream/35297;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/6163, chr18-CpG: 262/Downstream/239778
Nearby gene
ZBTB7C(No orient, 30995)
Nearest cancer related gene
ZBTB7C(TSG, No orient, 0)
Upstream sequence
GCCTTTCGGTCAGAGGCTCCCTGCAAAGAGGTCCTTGGAAAAGGCTTACTTGCTGCAAGGCAACCTCCTGGGATCCCTGCACCAAAGTTTTCAGATCTGG
Downstream sequence
AAACTGGCAAATTTTTGTTAGACAAATATGTGGTTGATGTGCAGGTTTTTCTAAACATGAAACAAACCCCACAAGTTATAAGGGGGAAAAGTGGTGGATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate