Basic Information
VIS ID
TVIS30012470
Fusion event
HIV-DYM integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
46923427/49397057 (Hg38)
End
46923427/49397057 (Hg38)
Orient
+
Location type
Intronic
Target gene
DYM
miRNAs that regulate target gene
hsa-mir-941 ; hsa-mir-129-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-106a-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-223-5p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p
Nearest miRNA
hsa-mir-1-2/Upstream/347289; hsa-mir-122/Downstream/90316;
Nearest TSS
ENST00000575820/Upstream/18408; ENST00000581232/Downstream/14884;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/420451, chr18-CpG: 74/Downstream/63077
Upstream sequence
attagataaaagggataagttctaatgttctattatacagtaaggtgactagagttaacaataatgtactttacatttcaaaatggctaaaataattttg
Downstream sequence
aatgttctcaccacaaagaaataacaagtgtttgaggtgatggatatgctaattgccctgatttaatcattacacaatgtataatgcatcgaaacatcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate