Basic Information
VIS ID
TVIS30012472
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
49509353/51982983 (Hg38)
End
49509353/51982983 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/1856420; hsa-mir-122/Downstream/1254118;
Nearest TSS
ENST00000575820/Upstream/422162; ENST00000582595/Downstream/356042;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/784928, chr18-CpG: 29/Downstream/359024
Nearby gene
DCC(No orient, 357189)
Nearest cancer related gene
DCC(TSG, No orient, 357189)
Upstream sequence
tacagggtcctgggcaacactggcatttaaaggccaaatggaggaagagaagcctatgaatgaaatgctaaaggagcagccagacaggtataagtaaaac
Downstream sequence
tagagaataataatattccaaaagtgaaaagaagagggagtcccatgaaggggatgatgaaacctattcaataccactAGGGTCGTGTGGTCTGTGTTTC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate