Basic Information
VIS ID
TVIS30012474
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
60185334/62518101 (Hg38)
End
60185334/62518101 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/4066943; hsa-mir-5011/Downstream/4563483;
Nearest TSS
ENST00000575820/Upstream/139971; ENST00000588676/Downstream/4906;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/133064, chr18-CpG: 293/Downstream/4175
Nearby gene
ZCCHC2(No orient, 5324)
Upstream sequence
acatggttggggtcgtattcatcagatttatccgtgtaaaagtacctcttctcctttttaaatgaggtggtactttgagaatacatgtttcatttcttaa
Downstream sequence
cttcccactcaatggtgaaaataccttaatcaattattacatttggtggtagcaaagtggtacttttctcactctctctttctgcatttttttaggggca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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