Basic Information
VIS ID
TVIS30012475
Fusion event
HIV-SERPINB7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
61426811/63759577 (Hg38)
End
61426811/63759577 (Hg38)
Orient
+
Location type
Intronic
Target gene
SERPINB7
Nearest miRNA
hsa-mir-1-2/Upstream/5308419; hsa-mir-5011/Downstream/3322007;
Nearest TSS
ENST00000575820/Upstream/6530; ENST00000431370/Downstream/15798;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/336453, chr18-CpG: 63/Downstream/176589
Upstream sequence
TTTTCTTTTTTATTGTAGTACCAGGCTTTCCTCTTCCATTATTATTTTTTTCTTTCTATTTGTTTTCTCCCTCTCTGCCTTTTACCAGTAGCTCATCTGG
Downstream sequence
TAACTGGAAGGGCTCCCATGCTCTCTCCTACCCCTGAAGTGGggtttggctgtgtctccacccaaattctcatcttgaattgtatctcccagaattccca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate