Basic Information
VIS ID
TVIS30012479
Fusion event
HIV-ZNF236-DT integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
74528921/76816965 (Hg38)
End
74528921/76816965 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ZNF236-DT
Nearest miRNA
hsa-mir-1-2/Upstream/3963583;
Nearest TSS
ENST00000575820/Upstream/11229; ENST00000583095/Downstream/5330;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/29280, chr18-CpG: 199/Downstream/4888
Upstream sequence
cagaatgccaggaacctggcagaagcagatgaaaatcttttattggagaatatcatcttataccttaaattactttttaagtaattttccaagtcatttc
Downstream sequence
tttcatatatctagacaaacaagaaggcagggcaacacaagaagaatcagcacaaattagaaaccaaaaaaaaaaaaaagacacacaggcactccctaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate