Basic Information
VIS ID
TVIS30012488
Fusion event
HIV-SBNO2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1115216/1115217 (Hg38)
End
1115216/1115217 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
SBNO2
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-32-5p ; hsa-mir-25-3p
Nearest miRNA
hsa-mir-1302-11/Upstream/301564; hsa-let-7e/Downstream/700942;
Nearest TSS
ENST00000633603/Upstream/3612; ENST00000593219/Downstream/4911;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2221, chr19-CpG: 27/Downstream/2054
Upstream sequence
tggagtttcaccatgttggccaggctggtctcaaactcctggcctcaggtgatttgcccgcctcagccttccaaagtgctgggattacaacaggcgtgac
Downstream sequence
ccactgcacctagccAATAttttatttttattaatttttttgagacaagagttttttctgtcacccaagttggagtgcagtggcatgatctcggctcact
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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