VISDB Viral Integration Site DataBase

VIS ID

TVIS30012493

Fusion event

HIV-DAZAP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

1417531/1417532 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-93-3p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-185-5p ; hsa-mir-222-3p ; hsa-mir-92a-3p ; hsa-mir-4670-3p ; hsa-mir-3613-3p ; hsa-mir-1303 ; hsa-mir-8075 ; hsa-mir-3925-5p ; hsa-mir-3123 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-218-5p ; hsa-mir-125b-2-3p ; hsa-mir-1285-3p ; hsa-mir-1343-3p ; hsa-mir-193a-5p ; hsa-mir-3187-5p ; hsa-mir-378g ; hsa-mir-4457 ; hsa-mir-4486 ; hsa-mir-513b-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-6505-5p ; hsa-mir-6742-3p ; hsa-mir-6781-5p ; hsa-mir-6783-3p ; hsa-mir-6852-5p ; hsa-mir-6860 ; hsa-mir-6877-5p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-1302-11/Upstream/603879; hsa-let-7e/Downstream/398627;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/8688, chr19-CpG: 75/Downstream/2220

Upstream sequence

GCTTGGATGGGGGCATTTCTAAGGCGAGCGCTGTCTTGATCCTGAATGTTTTCTCATTGAATCGCAGGAAGCTCTTCGTGGGCGGTCTTGACTGGAGCAC

Downstream sequence

GACCCAAGGTAGGTGGGGAAGGGGTGTCAGGTGGGTACTGCAGATGGGCTCTAGGACCTCGGCCTTCAAGTTGTGTCTGCCCGCCTCTTGCTACTGTCTT