VISDB Viral Integration Site DataBase

VIS ID

TVIS30012498

Fusion event

HIV-DOT1L integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

2206368/2206369 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-92a-3p ; hsa-let-7c-5p ; hsa-mir-412-3p ; hsa-mir-541-5p ; hsa-mir-485-5p ; hsa-mir-1203 ; hsa-mir-1208 ; hsa-mir-1227-5p ; hsa-mir-1249-5p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-2113 ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-329-5p ; hsa-mir-3663-3p ; hsa-mir-4443 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-452-5p ; hsa-mir-4676-3p ; hsa-mir-4781-3p ; hsa-mir-5010-3p ; hsa-mir-512-5p ; hsa-mir-5585-3p ; hsa-mir-5690 ; hsa-mir-5692a ; hsa-mir-589-3p ; hsa-mir-6515-5p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6762-5p ; hsa-mir-6766-5p ; hsa-mir-6787-3p ; hsa-mir-6797-5p ; hsa-mir-6803-5p ; hsa-mir-6804-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6845-5p ; hsa-mir-7110-5p ; hsa-mir-767-5p ; hsa-mir-892c-3p ; hsa-mir-92a-2-5p

Nearest miRNA

hsa-mir-1302-11/Upstream/390131; hsa-let-7e/Downstream/27693;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/5014, chr19-CpG: 23/Downstream/7492

Upstream sequence

gccactgcaccGCGCCGAGAATGTTTTTTAAAGAAGCATTATTTGtaggaggttgggcgtggtggctcacttgaggccaggagttccagacaagcctggc

Downstream sequence

cagcagggtgaaacccgctctctactaaaaatccaaaaattagccaggtgtggtggtgtgcgcctgtaatcacagctactcgcaaggctgaggcaggaga