Basic Information
VIS ID
TVIS30012503
Fusion event
HIV-MIR1268A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3796773/3796775 (Hg38)
End
3796773/3796775 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA19B
Target gene
MIR1268A
Nearest miRNA
hsa-mir-1227/Upstream/1165982; hsa-let-7e/Downstream/164639;
Nearest TSS
ENST00000633603/Upstream/7428; ENST00000595916/Downstream/5006;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/10120, chr19-CpG: 38/Downstream/4619
Upstream sequence
cctctcttcttcggcacaaggggattcttagatatagctcctgtttcttgggtgtgggtctccctgtttcttggtttggtcccttgttttaggaatgtgc
Downstream sequence
tccccctagggtttccagagaaagtgttttcctcctactctcctgggtaattagaggtttggctgacagtattgtaggtggatacttttcttttgcccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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