Basic Information
VIS ID
TVIS30012504
Fusion event
HIV-MIR1268A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3862086/3862088 (Hg38)
End
3862086/3862088 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19B
Target gene
MIR1268A
Nearest miRNA
hsa-mir-1227/Upstream/1231295; hsa-let-7e/Downstream/99326;
Nearest TSS
ENST00000633603/Upstream/6498; ENST00000595916/Downstream/6927;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/23863, chr19-CpG: 24/Downstream/6500
Upstream sequence
TTTTCCTTATTTTTCTAGGGCTGCCTAGTTATTTATCTGATCAGGGCCTTTGTCCCATGACCCCCAGAACCCCAGGAAAGAACACCAATATTCATTACCC
Downstream sequence
TCAGGTGAAAAGACTGTTTTCCAGGGCCATTTGAAAATGCTTTTAAATCTGATGTATTTGTTCTGATCATTCTAAATACACACGTTGGTAGACCCACACA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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