VISDB Viral Integration Site DataBase

VIS ID

TVIS30012506

Fusion event

HIV-TNFAIP8L1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

4644943/4644931 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-921 ; hsa-mir-6073 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-6778-3p ; hsa-mir-6128 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-3174 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-7113-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-6752-3p ; hsa-mir-6890-3p ; hsa-mir-6720-3p ; hsa-mir-668-5p ; hsa-mir-1539 ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-7856-5p ; hsa-mir-6807-5p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-4313 ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-1292-3p ; hsa-mir-6832-3p ; hsa-mir-6504-3p ; hsa-mir-4454 ; hsa-mir-4707-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3973 ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4715-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-1227-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-4740-3p ; hsa-mir-455-5p ; hsa-mir-4438 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4722-3p ; hsa-mir-498 ; hsa-mir-562 ; hsa-mir-5697 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6814-5p

Nearest miRNA

hsa-mir-1227/Upstream/198883; hsa-let-7e/Downstream/125739;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/5193, chr19-CpG: 46/Downstream/7160

Upstream sequence

ctaaggtgatctgcccgcctcgacctcccaaagtgctgggattacaggcatgagccaccacgcccagccTGTGAGTCATGGGTCTTAAAGGGCTTGGTGC

Downstream sequence

AGTGGGACCCTGGGAGTCGGTGGGATGAGGCCTGGGATCACTGGCCTCGGCGGGAAGAGGCCTGAGGCCCCCCCTGGGCCCCCGGACTGAGTGCAGCCGG