VISDB Viral Integration Site DataBase

VIS ID

TVIS30012508

Fusion event

HIV-GTF2F1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

6380714/6380703 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-423-5p ; hsa-mir-136-3p ; hsa-mir-6516-5p ; hsa-mir-1273e ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-377-5p ; hsa-mir-6134 ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-219b-3p ; hsa-mir-4324 ; hsa-mir-6761-5p ; hsa-mir-302f ; hsa-mir-3653-3p ; hsa-mir-6878-5p ; hsa-mir-6797-3p ; hsa-mir-6076 ; hsa-mir-29c-5p ; hsa-mir-7515 ; hsa-mir-586 ; hsa-mir-6760-5p ; hsa-mir-3943 ; hsa-mir-143-5p ; hsa-mir-5698 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-5693 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-494-3p ; hsa-mir-3190-5p ; hsa-mir-4728-3p ; hsa-mir-1178-5p ; hsa-mir-1265 ; hsa-mir-181b-2-3p ; hsa-mir-181b-3p ; hsa-mir-211-3p ; hsa-mir-4270 ; hsa-mir-4293 ; hsa-mir-4420 ; hsa-mir-4441 ; hsa-mir-4459 ; hsa-mir-4493 ; hsa-mir-5004-5p ; hsa-mir-5702 ; hsa-mir-615-3p ; hsa-mir-6165 ; hsa-mir-665 ; hsa-mir-6754-5p ; hsa-mir-7154-3p ; hsa-mir-765

Nearest miRNA

hsa-mir-1227/Upstream/1447963; hsa-let-7e/Downstream/8935;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/7083, chr19-CpG: 88/Downstream/12162

Upstream sequence

GCTGGGGTGTCGACTTCCCAGACAGGCTCTGGGGTCCCGTGTCCAGCCGCAACCGCTTGGCTGCAGGCATCTCGCTCACCCGCTTCCCTGTGGGAGTGGG

Downstream sequence

GTCAGGGCTGAGTCTTGCAGGCAGGAGGCAGAACCCCTGGGCAGGACCCCAGGCTGGGCAGTGCCAGGATTAGGGTTCAAGGGGATCAGGGAGAGACAGG