VISDB Viral Integration Site DataBase

VIS ID

TVIS30012515

Fusion event

HIV-ZNF557 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

7077949/7077938 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-25-3p ; hsa-mir-552-5p ; hsa-mir-7-5p ; hsa-mir-3190-3p ; hsa-mir-8087 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-1251-3p ; hsa-mir-3665 ; hsa-mir-6089 ; hsa-mir-1827 ; hsa-mir-1825 ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-449c-3p ; hsa-mir-3144-3p ; hsa-mir-889-3p ; hsa-mir-6077 ; hsa-mir-8086 ; hsa-mir-3146 ; hsa-mir-875-5p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6800-3p ; hsa-mir-1277-5p ; hsa-mir-659-3p ; hsa-mir-29b-2-5p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-9-5p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4639-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-7977 ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6793-3p ; hsa-mir-6866-5p ; hsa-mir-6499-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4487 ; hsa-mir-558 ; hsa-mir-3160-3p ; hsa-mir-4679 ; hsa-mir-191-3p ; hsa-mir-17-3p ; hsa-mir-1273g-3p ; hsa-mir-1228-3p ; hsa-mir-4668-5p

Nearest miRNA

hsa-mir-1227/Upstream/341160; hsa-let-7e/Downstream/539501;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/2851, chr19-CpG: 79/Downstream/20931

Upstream sequence

gatagccattcttgtggttgtctgtctcattgtggtttttatttctattccctaaaaaaaatgatgagattggccatcttttcttgtgcttgttggccat

Downstream sequence

ttatacatcttttttgaagaaatgttcattcaagtgctttttccatttggggggcattgtttgccttttcgttattgagttgtaagagttctttatatgt