Basic Information
VIS ID
TVIS30012519
Fusion event
HIV-LOC107983991 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
8779525/8669691 (Hg38)
End
8779525/8669691 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
LOC107983991
Nearest miRNA
hsa-mir-1227/Upstream/280311; hsa-let-7e/Downstream/1368663;
Nearest TSS
ENST00000633603/Upstream/39020; ENST00000324060/Downstream/29014;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/58702, chr19-CpG: 79/Downstream/27772
Nearby gene
ACTL9(No orient, 28222)
Upstream sequence
TACCCTTCAGAGGTGCTATGCAAACTCAAAACTGTGTCCTCACTGAAACAAGTGGAAGTATCTGGggacatttaacctggtgcattaggaagggtttggg
Downstream sequence
tactggatcccattgtacctggattctggctgtgcgacctcaggcaggtcacttgacctctcagagctttgctttcctgatctgtcaaatcaggatgata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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