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TVIS30012527
Basic Information
VIS ID
TVIS30012527
Fusion event
HIV-ICAM1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10390317/10279641 (Hg38)
End
10390317/10279641 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ICAM1
miRNAs that regulate target gene
hsa-mir-17-3p
;
hsa-mir-221-3p
;
hsa-mir-222-3p
;
hsa-mir-31-5p
;
hsa-mir-17-5p
;
hsa-mir-155-5p
;
hsa-mir-1256
;
hsa-mir-21-5p
;
hsa-mir-335-5p
;
hsa-mir-98-5p
;
hsa-mir-296-3p
;
hsa-mir-146a-5p
;
hsa-mir-485-5p
;
hsa-mir-6884-5p
;
hsa-mir-93-5p
;
hsa-mir-324-3p
;
hsa-mir-3941
;
hsa-mir-1255b-5p
;
hsa-mir-1255a
;
hsa-mir-3188
;
hsa-mir-2467-5p
;
hsa-mir-3975
;
hsa-mir-3186-3p
;
hsa-mir-4789-3p
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-8485
;
hsa-mir-466
;
hsa-mir-4643
;
hsa-mir-92b-3p
;
hsa-mir-32-5p
;
hsa-mir-92a-3p
;
hsa-mir-141-5p
Nearest miRNA
hsa-mir-1227/Upstream/49156; hsa-let-7e/Downstream/123817;
Nearest TSS
ENST00000633603/Upstream/8521;
ENST00000585443/Downstream/2617;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/8352
,
chr19-CpG: 80/Downstream/7286
Upstream sequence
gccatcttggctcactgcagcctcctccacctcctgggttcaaccgattctgctgcctgagcctcccgagttgctgggattaaggtgcccaccatcatgc
Downstream sequence
ccagctaatttttttgtatttttagtagagatagggtttaccatgttagccaggctggtcttgaacgcctgaccgcaagagatcctcctgcctcagtttc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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