Basic Information
VIS ID
TVIS30012531
Fusion event
HIV-ZNF763 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
12085122/11974307 (Hg38)
End
12085122/11974307 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ZNF763
miRNAs that regulate target gene
hsa-mir-181a-5p ; hsa-mir-151a-3p ; hsa-mir-196a-5p ; hsa-let-7d-5p ; hsa-mir-4320 ; hsa-mir-490-5p ; hsa-mir-1246 ; hsa-mir-3168 ; hsa-mir-7153-3p
Nearest miRNA
hsa-mir-1181/Upstream/478685; hsa-let-7e/Downstream/729294;
Nearest TSS
ENST00000633603/Upstream/9225; ENST00000481745/Downstream/2515;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/8756, chr19-CpG: 34/Downstream/13449
Upstream sequence
gttttttgttttgtgtctagttcttgttacctaggctggagtgcaatggcatgatctcagctcactgctgcctctgcctcccaggttgaagcaattctcc
Downstream sequence
tgactcagcctcccaagtagctgggattacaggcgtggtcctccactcctgataaatttttgtattattagtagagatgacattttaccatgttggccgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate