VISDB Viral Integration Site DataBase

VIS ID

TVIS30012546

Fusion event

HIV-TPM4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

16213738/16102928 (Hg38)

Orient

-

Location type

UTR3

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-940 ; hsa-mir-125a-5p ; hsa-mir-28-5p ; hsa-let-7b-5p ; hsa-mir-651-3p ; hsa-mir-4477b ; hsa-mir-5089-3p ; hsa-mir-3148 ; hsa-mir-4496 ; hsa-mir-6747-3p ; hsa-mir-6752-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-376c-5p ; hsa-mir-20b-5p ; hsa-mir-376b-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-876-5p ; hsa-mir-1290 ; hsa-mir-3167 ; hsa-mir-3609 ; hsa-mir-3691-5p ; hsa-mir-3911 ; hsa-mir-548ah-5p ; hsa-mir-4509 ; hsa-mir-4684-3p ; hsa-mir-4744 ; hsa-mir-4752 ; hsa-mir-4796-3p ; hsa-mir-8056 ; hsa-mir-6790-5p ; hsa-mir-582-5p ; hsa-mir-4696 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-3186-5p ; hsa-mir-6893-5p ; hsa-mir-4438 ; hsa-mir-6808-5p ; hsa-mir-3160-3p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-504-5p ; hsa-mir-6510-5p

Nearest miRNA

hsa-mir-10395/Upstream/653320; hsa-let-7e/Downstream/2179149;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/25463, chr19-CpG: 93/Downstream/8374

Upstream sequence

TACCCACCCCACCCCACCACCCTACTCCTATTTATTCAGCACCACACTACCCAGGAAATACACTAGCAAATTGTGCAATGGAATAAAATCCACACTTTAG

Downstream sequence

ATTCTTGCAACTGTATCATATGTAATAGTATCACTTTTTCTACATTTTGGTCAAATAAATTTTTACATAAACTACAATTTGCGTGAATTTTAGAATGTGT