Basic Information
VIS ID
TVIS30012547
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
16444226/16333415 (Hg38)
End
16444226/16333415 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-10395/Upstream/883807; hsa-let-7e/Downstream/1948662;
Nearest TSS
ENST00000633603/Upstream/8575; ENST00000587343/Downstream/19767;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/6327, chr19-CpG: 21/Downstream/22173
Nearby gene
KLF2(No orient, 5887)
Nearest cancer related gene
KLF2(OG, No orient, 5887)
Upstream sequence
ttgggataaggtctcgctctgttgcccaggctggagtgcagtggtgcgatcacagctaactgcagcctcgaacccctgggttcaagcaatcctcctgcat
Downstream sequence
cagcctctcgGGCTGGTTCTTACTGGGGGCTCCCCTGAGTGCAGAGAACAGGCCCAAGCTGATGCCAGTTAGGGAAGTCATCTCTATAGTTCTAGAAGGG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate