Basic Information
VIS ID
TVIS30012552
Fusion event
HIV-MVB12A integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
17527290/17416481 (Hg38)
End
17527290/17416481 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
MVB12A
miRNAs that regulate target gene
hsa-mir-124-3p
Nearest miRNA
hsa-mir-10395/Upstream/1966873; hsa-let-7e/Downstream/865596;
Nearest TSS
ENST00000633603/Upstream/10336; ENST00000528732/Downstream/2600;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/22214, chr19-CpG: 91/Downstream/3360
Upstream sequence
ttacaggcttgagccaccgtgcccagccTGCtttttttttttttttttccttgagacagagtctcattctgtcacccaggctggagtgcagaggcaccat
Downstream sequence
ttctgctcactgaaacctccacttctggggctcaagcaattctcctctctcagcctcaggagtagctgggattacaggcgcctgccaccaagcctggcta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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