VISDB Viral Integration Site DataBase

VIS ID

TVIS30012558

Fusion event

HIV-MAST3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

18253685/18142875 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-484 ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-7848-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4704-5p ; hsa-mir-7156-3p ; hsa-mir-5196-5p ; hsa-mir-3178 ; hsa-mir-4747-5p ; hsa-mir-566 ; hsa-mir-6720-3p ; hsa-mir-4691-3p ; hsa-mir-3614-5p ; hsa-mir-6826-3p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-676-5p ; hsa-mir-372-5p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-6729-3p ; hsa-mir-125a-3p ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-552-3p ; hsa-mir-4506 ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-4293 ; hsa-mir-6771-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-25-5p ; hsa-mir-3160-3p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-4487 ; hsa-mir-455-3p ; hsa-mir-558 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-658

Nearest miRNA

hsa-mir-10395/Upstream/2693267; hsa-let-7e/Downstream/139202;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/10789, chr19-CpG: 25/Downstream/2137

Upstream sequence

gactacaggcgtgcaccacggcacccggctaattttttaagcaattttttgtaggccaggtgcagtgacttacacctgtaatcccaacactttgggaagc

Downstream sequence

cgaggcaggtggattacctgaggtcaggagttcaagaccagcctggtcaacatggcaaaaccccatctctactaaaactccaaaaatttagccgggcata