VISDB Viral Integration Site DataBase

VIS ID

TVIS30012561

Fusion event

HIV-FKBP8 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

18648427/18537617 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1301-3p ; hsa-mir-421 ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-mir-1207-5p ; hsa-mir-1275 ; hsa-mir-1321 ; hsa-mir-1343-5p ; hsa-mir-143-5p ; hsa-mir-149-3p ; hsa-mir-2110 ; hsa-mir-2467-3p ; hsa-mir-3138 ; hsa-mir-3150a-3p ; hsa-mir-3175 ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-3616-3p ; hsa-mir-3650 ; hsa-mir-3678-3p ; hsa-mir-3944-5p ; hsa-mir-4259 ; hsa-mir-4270 ; hsa-mir-4436b-3p ; hsa-mir-4441 ; hsa-mir-449a ; hsa-mir-449b-5p ; hsa-mir-450a-2-3p ; hsa-mir-4520-3p ; hsa-mir-4525 ; hsa-mir-4632-5p ; hsa-mir-4640-5p ; hsa-mir-4651 ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4726-5p ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-4763-3p ; hsa-mir-4779 ; hsa-mir-5010-5p ; hsa-mir-5698 ; hsa-mir-571 ; hsa-mir-608 ; hsa-mir-6090 ; hsa-mir-6132 ; hsa-mir-625-5p ; hsa-mir-637 ; hsa-mir-661 ; hsa-mir-6721-5p ; hsa-mir-6732-5p ; hsa-mir-6735-5p ; hsa-mir-6752-5p ; hsa-mir-6753-5p ; hsa-mir-6754-5p ; hsa-mir-6762-5p ; hsa-mir-6763-5p ; hsa-mir-6785-5p ; hsa-mir-6810-5p ; hsa-mir-6825-5p ; hsa-mir-6827-5p ; hsa-mir-6836-5p ; hsa-mir-6842-5p ; hsa-mir-6845-5p ; hsa-mir-6852-5p ; hsa-mir-6857-5p ; hsa-mir-6870-5p ; hsa-mir-6879-5p ; hsa-mir-6883-5p ; hsa-mir-7110-5p ; hsa-mir-7111-5p ; hsa-mir-7113-5p ; hsa-mir-765 ; hsa-mir-7843-5p ; hsa-mir-939-5p

Nearest miRNA

hsa-mir-10395/Upstream/150983; hsa-let-7e/Downstream/897446;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/14974, chr19-CpG: 67/Downstream/5421

Upstream sequence

ATGCCTTTCTCAAATGCAGGGTTGGGGACCACCCCGTATACCCCAGGCTGAGTGACCCGGCCTGGCACCCCGGTGTGGCCTACCTTGCCCTTGCGGAAGA

Downstream sequence

GAGCCTTGATGTTGTCTGGCTGGTGCTCCAGCACAAGGCTGCAGGAGCGCAGGGCTGCGCGGTAGTGGTCGAGCTTCAGCTGCGAGGCCGCCAGGTTGTT