VISDB Viral Integration Site DataBase

VIS ID

TVIS30012566

Fusion event

HIV-ZNF101 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

19785449/19674640 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1260b ; hsa-mir-576-3p ; hsa-mir-6833-5p ; hsa-mir-548s ; hsa-mir-3190-3p ; hsa-mir-3926 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-548as-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-1273e ; hsa-mir-4722-5p ; hsa-mir-219b-3p ; hsa-mir-4768-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-6165 ; hsa-mir-1912 ; hsa-mir-1295b-5p ; hsa-mir-302f ; hsa-mir-498 ; hsa-mir-4284 ; hsa-mir-4634 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5695 ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-3691-3p ; hsa-mir-6890-3p ; hsa-mir-2114-5p ; hsa-mir-3157-5p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-8086 ; hsa-mir-4755-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-5004-5p ; hsa-mir-550b-2-5p ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-1227-3p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-1273a ; hsa-mir-661 ; hsa-mir-4252 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-4486 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-1303 ; hsa-mir-483-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4641 ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-6856-3p ; hsa-mir-1178-3p ; hsa-mir-1234-3p ; hsa-mir-1306-5p ; hsa-mir-1827 ; hsa-mir-3664-3p ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-485-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-665 ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7107-5p ; hsa-mir-7160-5p ; hsa-mir-873-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-10395/Upstream/239482; hsa-let-7e/Downstream/724632;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/5303, chr19-CpG: 45/Downstream/58033

Upstream sequence

taatcctttaaatatgctgtcaggtatgatttgctagcatttatttgaggattttttgcattgatattcataaagggcatttgtagttttgttttttgta

Downstream sequence

gtgtctgtctttggtgtcagcataattttgacctcatagagggagtttggaaatgtcccctcttcagttttggaagagtttgaggaggattgatagcaat