Basic Information
VIS ID
TVIS30012568
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29236807/28745900 (Hg38)
End
29236807/28745900 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/8346546; hsa-let-7e/Downstream/6376800;
Nearest TSS
ENST00000633603/Upstream/97597; ENST00000585883/Downstream/123896;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/18074, chr19-CpG: 82/Downstream/47506
Nearby gene
LOC100420587(No orient, 18206)
Upstream sequence
ATTCCTGACCAGCTGGGGTGATGGTACCCTAGGAGAAGGTATCATTCCATACTAGTCTTGAGCTCAGAAGCAGATCCGGGAGGAATTGTCCCTTAAGCAC
Downstream sequence
TAAgggtttctactcttctcaacccatattcattccttagtttatcccacccagtctcgtggctttaaactccatctacatTTTTCACTTTTGaaagcat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate