Basic Information
VIS ID
TVIS30012572
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
32793495/32302589 (Hg38)
End
32793495/32302589 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/11903235; hsa-let-7e/Downstream/2820111;
Nearest TSS
ENST00000633603/Upstream/196673; ENST00000587084/Downstream/43005;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/77805, chr19-CpG: 52/Downstream/42858
Nearby gene
ZNF507(No orient, 43019)
Upstream sequence
tctcgctctgtcaccaggctggagtgcagtggcatgatctcggctcactgcagcctccacctcccaggttcaagtgatttctcctgcctcagcctcccac
Downstream sequence
gtagctgagactacaggtgtgtgccaccacgcctggctaatttttgtatttttaggagagatggggtttcactatgttggccaggatggtcttgatctcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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