Basic Information
VIS ID
TVIS30012581
Fusion event
HIV-ZNF565 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
36694267/36203365 (Hg38)
End
36694267/36203365 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF565
miRNAs that regulate target gene
hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4438 ; hsa-mir-3190-5p
Nearest miRNA
hsa-mir-10395/Upstream/857738; hsa-let-7e/Downstream/3206258;
Nearest TSS
ENST00000633603/Upstream/50496; ENST00000587285/Downstream/10027;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/50682, chr19-CpG: 75/Downstream/11166
Upstream sequence
gcagaggttgtggtgagccgagatcgcaccattgcactccagcctgggcaataaaaacaaaactctgtctcaaaaaaaaaaaaaaaaaaaGAcaagtaca
Downstream sequence
gtagtgagaagagggggaagaatagaacaaggagttcaattcataactgactgtgaacaatcaatggagataactcactaccttccgaccaTCTACTGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate