VISDB Viral Integration Site DataBase

VIS ID

TVIS30012587

Fusion event

HIV-PLEKHG2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.2

Reference genome

Start

End

39908637/39417997 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-192-5p ; hsa-mir-744-5p ; hsa-mir-324-3p ; hsa-mir-197-3p ; hsa-mir-6881-5p ; hsa-mir-6834-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-199b-5p ; hsa-mir-199a-5p ; hsa-mir-1825 ; hsa-mir-6890-5p ; hsa-mir-6757-5p ; hsa-mir-4423-3p ; hsa-mir-5191 ; hsa-mir-3622a-5p ; hsa-mir-5582-5p ; hsa-mir-6871-3p ; hsa-mir-941 ; hsa-mir-5096 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-483-5p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-665 ; hsa-mir-133a-3p ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-4281 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6804-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-106a-3p ; hsa-mir-1273g-3p ; hsa-mir-203b-3p ; hsa-mir-221-5p ; hsa-mir-3064-3p ; hsa-mir-4252 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4680-5p ; hsa-mir-4683 ; hsa-mir-4684-3p ; hsa-mir-4715-3p ; hsa-mir-4776-3p ; hsa-mir-4786-5p ; hsa-mir-4793-3p ; hsa-mir-4793-5p ; hsa-mir-4794 ; hsa-mir-508-5p ; hsa-mir-5694 ; hsa-mir-6502-3p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-664a-5p ; hsa-mir-6720-5p ; hsa-mir-6807-5p ; hsa-mir-6849-3p ; hsa-mir-6888-5p ; hsa-mir-6894-5p ; hsa-mir-7106-5p ; hsa-mir-7158-3p ; hsa-mir-766-3p ; hsa-mir-7703 ; hsa-mir-8073 ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10395/Upstream/8319; hsa-let-7e/Downstream/411719;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/4334, chr19-CpG: 56/Downstream/17587

Upstream sequence

CCGGCAGGAAGTGCAGCGGCGGCTGGGTGGCTGGACCGGACCAGAGCTCAGTGCTTTTGGGGAACTGGTGTTGGAGGGCGCGTTCCGAGGAGGCGGAGGG

Downstream sequence

GGTGGCCCCCGGCTACGAGGGGGTGAGCGGCTGCTCTTCCTGTTCTCTCGGATGCTGCTGGTGGCCAAGCGCAGGGGGCTGGAGTACACCTACAAAGGCC