Basic Information
VIS ID
TVIS30012600
Fusion event
HIV-MIA-RAB4B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
41290397/40784492 (Hg38)
End
41290397/40784492 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
MIA-RAB4B
Nearest miRNA
hsa-mir-10395/Upstream/414585; hsa-let-7e/Downstream/1085135;
Nearest TSS
ENST00000633603/Upstream/4421; ENST00000598430/Downstream/1041;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/6121, chr19-CpG: 124/Downstream/14070
Upstream sequence
tgaggcaggaggatcacctgagcctgagagtttaagactgcagtgagctgtgatcacgccattgtactccagtctgggagacagagcaagacactgtctc
Downstream sequence
caaaaacaacaacaacaacaaaacaacaacaaaactaagtgttgccatcagtgagctatgtgattacactggttctcagtttcttcatctggaaagtggg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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