Basic Information
VIS ID
TVIS30012611
Fusion event
HIV-GEMIN7 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
45585666/45082408 (Hg38)
End
45585666/45082408 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
GEMIN7
miRNAs that regulate target gene
hsa-let-7b-5p
Nearest miRNA
hsa-mir-10395/Upstream/323687; hsa-let-7e/Downstream/354246;
Nearest TSS
ENST00000633603/Upstream/3120; ENST00000593240/Downstream/7966;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2730, chr19-CpG: 55/Downstream/8731
Upstream sequence
attcctaatttcattcaggtctatgctcaaacgtaatcttatcatagggatctttcctgggctcccttgaaactaccctctatcccccaggctgggtcag
Downstream sequence
gtgtctcctctggactccttcattccagccctactcactttgggtcatcactgcctaaggacaggtctgtgtcccctattggactgtgagcccacaaagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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