Basic Information
VIS ID
TVIS30012613
Fusion event
HIV-VASP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
46016655/45513397 (Hg38)
End
46016655/45513397 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
VASP
miRNAs that regulate target gene
hsa-mir-610 ; hsa-mir-193b-3p ; hsa-mir-1-3p ; hsa-mir-330-5p ; hsa-mir-3615 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-3679-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-6832-3p ; hsa-mir-361-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-4282 ; hsa-mir-3606-3p ; hsa-mir-4251 ; hsa-mir-2355-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-6778-3p ; hsa-mir-3141 ; hsa-mir-199a-5p ; hsa-mir-199b-5p ; hsa-mir-214-3p ; hsa-mir-34a-3p ; hsa-mir-3617-3p ; hsa-mir-3619-5p ; hsa-mir-4291 ; hsa-mir-4302 ; hsa-mir-4468 ; hsa-mir-4676-5p ; hsa-mir-575 ; hsa-mir-609 ; hsa-mir-6748-5p ; hsa-mir-6759-5p ; hsa-mir-6772-5p ; hsa-mir-6793-5p ; hsa-mir-761 ; hsa-mir-922
Nearest miRNA
hsa-mir-10395/Upstream/76693; hsa-let-7e/Downstream/125597;
Nearest TSS
ENST00000633603/Upstream/5887; ENST00000590459/Downstream/9159;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5363, chr19-CpG: 33/Downstream/4256
Upstream sequence
caagtgacctgaacaaggctcactgcagcctcatcctcttggactcaagtgatcctcctgcctcaccctcctgagtagctgggactacaggcaagcgcca
Downstream sequence
ccacacccagctaattttaaagttttttgtacagacggaggtcaccatcttgcccaagctagtctctctcctttttttttttttttttttttgagacaga
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate