Basic Information
VIS ID
TVIS30012623
Fusion event
HIV-SAE1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
47685317/47182060 (Hg38)
End
47685317/47182060 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
SAE1
miRNAs that regulate target gene
hsa-mir-1229-3p ; hsa-mir-615-3p ; hsa-mir-324-3p ; hsa-mir-151a-3p ; hsa-mir-30a-5p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-203a-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-4266 ; hsa-mir-4695-5p ; hsa-mir-4779 ; hsa-mir-1273g-5p ; hsa-mir-6816-3p ; hsa-mir-3651 ; hsa-mir-6779-3p ; hsa-mir-7976 ; hsa-mir-651-5p ; hsa-mir-299-5p ; hsa-mir-103b ; hsa-mir-129-2-3p ; hsa-mir-129-1-3p ; hsa-mir-4687-5p
Nearest miRNA
hsa-mir-10395/Upstream/472706; hsa-let-7e/Downstream/44882;
Nearest TSS
ENST00000633603/Upstream/51165; ENST00000601154/Downstream/40508;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/50953, chr19-CpG: 88/Downstream/44000
Upstream sequence
aattttattgtagagaggcctcactccatggcctaggctggtcttgaactcctgggctcaagtgatcctcccacttctgcctcccaaagcattgggataa
Downstream sequence
cagacgtgagccactgcacccagccTGTTAGATAATTTAGAAAATTTTCTTTCCTCATTCTTCAATTTCCCCTCATTCACACTCCCAACTTTCCTGTTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate