Basic Information
VIS ID
TVIS30012637
Fusion event
HIV-RPL13AP5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
49992782/49489525 (Hg38)
End
49992782/49489525 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
RPL13AP5
Nearest miRNA
hsa-mir-10395/Upstream/180657; hsa-let-7e/Downstream/11260;
Nearest TSS
ENST00000633603/Upstream/1891; ENST00000468655/Downstream/325;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1264, chr19-CpG: 57/Downstream/6470
Upstream sequence
gggaggtcacaggatcacaggacagcctgtgcaacagcgagaccctgtctcaaaaCCAAATCCTACAGTTTATTAGTTACAAGGTCTTGTAACTGGGTAG
Downstream sequence
TCAGTGGGCAGAGCCTTGCTGGTCTTCGTTCAAATCCAATTGCTTTGCAAAATACAATCTGAGCATAAAATACTCATAGAAGAACTCAGATATGAGGGGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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