Basic Information
VIS ID
TVIS30012638
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
49997189/49493932 (Hg38)
End
49997189/49493932 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/185064; hsa-let-7e/Downstream/6853;
Nearest TSS
ENST00000633603/Upstream/3092; ENST00000601216/Downstream/2433;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5671, chr19-CpG: 57/Downstream/2063
Nearby gene
RPL13A(No orient, 1625)
Upstream sequence
aattttttttttttttttgagacagagtctggctctgtcgcccaggctggagtgcagtagcgcgatctcggctcactgcaagctccgccccccgggttca
Downstream sequence
cgccattctcctgcctcagcctcccgagtagctgggactacaggtgcccgccaccgtgcctggctaattttttttatttttagtacagacggggtttcac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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