Basic Information
VIS ID
TVIS30012644
Fusion event
HIV-NOSIP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50065739/49562482 (Hg38)
End
50065739/49562482 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
NOSIP
miRNAs that regulate target gene
hsa-mir-193b-3p ; hsa-mir-124-3p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10395/Upstream/61614; hsa-let-7e/Downstream/119635;
Nearest TSS
ENST00000633603/Upstream/1791; ENST00000596877/Downstream/16796;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5564, chr19-CpG: 17/Downstream/18018
Upstream sequence
caaagtgctgggattacaggcgtgagtcactgtgcctggccCCTGCAGGCTTTTTTATCCCTTAAAATGATTTAGAgccaggctcagggctcacgcctgt
Downstream sequence
aatcccaaaactttgggaggctgaagcaagaggactgttgagcccaggagatggagatgagcctaggcaacacagcaagatccatctctattaaatttaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate