Fusion event
HIV-VRK3 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
50499435/49996178 (Hg38)
Nearest miRNA
hsa-mir-10395/Upstream/63041; hsa-let-7e/Downstream/1210751;
Upstream sequence
atccaactaatttttgtatttttagtagagatggagtttcaccatgttggccaggatggtctcaatctcctgacctcatgatccgcccgcctcggcctcc
Downstream sequence
caaagtgctgagattacaggcatcagccaccacgcccggccttttttttttgtattttcaatagagatgggttttgccatgttggccaggctggtctcga
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.