Basic Information
VIS ID
TVIS30012649
Fusion event
HIV-ZNF836 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
52663795/52160542 (Hg38)
End
52663795/52160542 (Hg38)
Orient
+
Location type
Exonic
Fragile sites / regions
FRA19A
Target gene
ZNF836
Nearest miRNA
hsa-let-7e/Upstream/467203; hsa-mir-10394/Downstream/61478;
Nearest TSS
ENST00000633603/Upstream/5578; ENST00000599775/Downstream/106;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/20387, chr19-CpG: 38/Downstream/10532
Upstream sequence
TCTAGAGCAAAATTATCCTTACCCAGGAAGACCAGGTTCCTGTAGTTCTCCAACATCACATCCCAGTACAAAGCTTTCTGCACAGGGTCCAGGGATTTCC
Downstream sequence
ACTCCTCCTGAGAGAATTCTATGGCTACATCCCTGAATGTCAAAGGTCCCTGAAATGAAAAACACATTTCAACATGAGCAATGGGAGAGCTCTTATCTAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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