VISDB Viral Integration Site DataBase

VIS ID

TVIS30012650

Fusion event

HIV-ZNF766 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.41

Reference genome

Start

End

52781907/52278654 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-342-3p ; hsa-mir-1273g-3p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6776-5p ; hsa-mir-661 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-1228-3p ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-7156-3p ; hsa-mir-6516-3p ; hsa-mir-1206 ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-8084 ; hsa-mir-665 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-619-3p ; hsa-mir-34b-3p ; hsa-mir-490-3p ; hsa-mir-1305 ; hsa-mir-5701

Nearest miRNA

hsa-let-7e/Upstream/56556; hsa-mir-10394/Downstream/3143;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/8650, chr19-CpG: 43/Downstream/18492

Upstream sequence

cagcacactcagctaattgttgtattttcagtagagacggagcttcaccatggtggccaggctggtctcggaacttctgatgtcaggtgatccaactgcc

Downstream sequence

tcagcctcccaaagtgctgggattataggcatgagccaccgcacctggccctttgcccactttttaatggggttttctcttgtaaatttgcttaagttcc