VISDB Viral Integration Site DataBase

VIS ID

TVIS30012651

Fusion event

HIV-ZNF701 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.41

Reference genome

Start

End

53103817/52600564 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-142-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-4439 ; hsa-mir-943 ; hsa-mir-3136-5p ; hsa-mir-127-5p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-100-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-23c ; hsa-mir-23b-3p ; hsa-mir-23a-3p ; hsa-mir-130a-5p ; hsa-mir-340-5p ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-6845-3p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-770-5p ; hsa-mir-4712-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-6507-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-7159-3p ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-6742-5p ; hsa-mir-193b-5p ; hsa-mir-676-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-8075 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-383-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6796-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-491-5p ; hsa-mir-4307

Nearest miRNA

hsa-let-7e/Upstream/318671; hsa-mir-10394/Downstream/1066115;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/15157, chr19-CpG: 44/Downstream/729

Nearby gene

ZNF137P(No orient, 412)

Upstream sequence

cactgagccgagaccttgccactgcactccagcctggacgacagagaaatactctgtcttaaaaaaaaaaaaaggaaaTTAAgaaagtaatagatctcct

Downstream sequence

ccacaaatgtgctgggacaactaacttgatattcacatggaaaagaataatgttggatccctacatcacacaatcaaaattttattttaaaAAGTTAGAG