Basic Information
VIS ID
TVIS30012654
Fusion event
HIV-ZNF321P integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
53431862/52928609 (Hg38)
End
53431862/52928609 (Hg38)
Orient
+
Location type
ncRNA_exonic
Fragile sites / regions
FRA19A
Target gene
ZNF321P
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-6776-5p ; hsa-mir-6819-5p ; hsa-mir-6812-5p ; hsa-mir-6737-5p ; hsa-mir-143-5p ; hsa-mir-6747-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-3622b-5p ; hsa-mir-4731-5p ; hsa-mir-6499-3p ; hsa-mir-7155-5p ; hsa-mir-5693 ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-4777-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-371a-5p ; hsa-mir-372-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-7106-3p ; hsa-mir-6505-3p ; hsa-mir-617 ; hsa-mir-212-5p ; hsa-mir-7108-3p ; hsa-mir-4258
Nearest miRNA
hsa-let-7e/Upstream/646716; hsa-mir-10394/Downstream/738070;
Nearest TSS
ENST00000633603/Upstream/5128; ENST00000596769/Downstream/34159;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/4996, chr19-CpG: 46/Downstream/13482
Upstream sequence
TGAAGTCTATGATGACGTGCAAGGTGTGCTTTCTGATTAAAAACCTTGCCACATTCATTACACTTGCAAGGATTCTCTCCAGTATGAATTGCCTTATGAA
Downstream sequence
TTACAAGGGCTGAATTTCAACCAAAGGTCTTGTTATGCTCACTACACTTGTAAGGTTTCCCTCCAGTATGAAGTCTACGATAGCATGTAAAGGATGACGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate