Basic Information
VIS ID
TVIS30012655
Fusion event
HIV-FIZ1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.42
Reference genome
GRCh37/hg19
Start
56106439/55595073 (Hg38)
End
56106439/55595073 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
FIZ1
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-186-5p ; hsa-mir-27a-3p ; hsa-mir-484 ; hsa-mir-4291 ; hsa-mir-6716-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-130b-5p ; hsa-mir-383-3p ; hsa-mir-3065-3p ; hsa-mir-6783-5p
Nearest miRNA
hsa-let-7e/Upstream/206831; hsa-mir-10394/Downstream/2739615;
Nearest TSS
ENST00000633603/Upstream/14228; ENST00000589521/Downstream/2769;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1468, chr19-CpG: 106/Downstream/4262
Upstream sequence
aatcgaatctcccaggagggagtccaggaatctgtattttTTTCTGAGGCATTGCCAGGCTTGTAGACTGTGTAAAACCGTGCCTTAGAGAGGTTTTTTG
Downstream sequence
TATTGATATTTGTCCTTGTTGATTTAAGATTTTGGAATAACAGAGAGAGATTTGTGAGTAtggtaatgtcttcctggaggcctgtgaggagaagggtgag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate