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TVIS30012658
Basic Information
VIS ID
TVIS30012658
Fusion event
HIV-ZNF460 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57801676/57290308 (Hg38)
End
57801676/57290308 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF460
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-7-5p
;
hsa-mir-222-3p
;
hsa-mir-143-5p
;
hsa-mir-455-5p
;
hsa-mir-545-5p
;
hsa-mir-573
;
hsa-mir-595
;
hsa-mir-648
;
hsa-mir-3616-5p
;
hsa-mir-3662
;
hsa-mir-3944-5p
;
hsa-mir-4641
;
hsa-mir-4795-5p
;
hsa-mir-155-3p
;
hsa-mir-3074-3p
;
hsa-mir-29a-5p
;
hsa-mir-95-5p
;
hsa-mir-7-1-3p
;
hsa-mir-7-2-3p
;
hsa-mir-204-3p
;
hsa-mir-142-3p
;
hsa-mir-485-5p
;
hsa-mir-495-3p
;
hsa-mir-508-5p
;
hsa-mir-509-3p
;
hsa-mir-922
;
hsa-mir-548e-5p
;
hsa-mir-1261
;
hsa-mir-1827
;
hsa-mir-1910-3p
;
hsa-mir-3611
;
hsa-mir-3920
;
hsa-mir-4533
;
hsa-mir-3976
;
hsa-mir-4639-5p
;
hsa-mir-4646-5p
;
hsa-mir-451b
;
hsa-mir-5186
;
hsa-mir-5688
;
hsa-mir-6511a-5p
;
hsa-mir-6758-5p
;
hsa-mir-6856-5p
;
hsa-mir-6884-5p
;
hsa-mir-8080
;
hsa-mir-487a-5p
;
hsa-mir-487b-5p
;
hsa-mir-548l
;
hsa-mir-548n
;
hsa-mir-5579-5p
;
hsa-mir-34a-3p
;
hsa-mir-885-5p
;
hsa-mir-3912-5p
;
hsa-mir-6776-3p
;
hsa-mir-361-5p
;
hsa-mir-2115-3p
;
hsa-mir-30a-5p
;
hsa-mir-30c-5p
;
hsa-mir-30d-5p
;
hsa-mir-30b-5p
;
hsa-mir-30e-5p
;
hsa-mir-520a-5p
;
hsa-mir-411-5p
;
hsa-mir-1288-5p
;
hsa-mir-5697
;
hsa-mir-4495
;
hsa-mir-6873-5p
;
hsa-mir-9500
;
hsa-mir-499a-3p
;
hsa-mir-4683
;
hsa-mir-4521
;
hsa-mir-6888-5p
;
hsa-mir-22-3p
;
hsa-mir-6891-5p
;
hsa-mir-3173-3p
;
hsa-mir-548ad-3p
;
hsa-mir-548c-3p
;
hsa-mir-6728-5p
;
hsa-mir-5187-5p
;
hsa-mir-3682-3p
;
hsa-mir-3148
;
hsa-mir-1972
;
hsa-mir-9-3p
;
hsa-mir-5093
;
hsa-mir-3928-3p
;
hsa-mir-3688-3p
;
hsa-mir-6838-5p
;
hsa-mir-497-5p
;
hsa-mir-424-5p
;
hsa-mir-195-5p
;
hsa-mir-16-5p
;
hsa-mir-15b-5p
;
hsa-mir-15a-5p
;
hsa-mir-522-3p
;
hsa-mir-224-3p
;
hsa-mir-5692a
;
hsa-mir-6835-3p
;
hsa-mir-7856-5p
;
hsa-mir-4328
;
hsa-mir-4709-3p
;
hsa-mir-4799-5p
;
hsa-mir-7977
;
hsa-mir-6797-5p
;
hsa-mir-1249-5p
;
hsa-mir-4779
;
hsa-mir-944
;
hsa-mir-335-3p
;
hsa-mir-5096
;
hsa-mir-5009-3p
;
hsa-mir-500a-5p
;
hsa-mir-3121-3p
;
hsa-mir-942-3p
;
hsa-mir-570-3p
;
hsa-mir-361-3p
;
hsa-mir-6729-3p
;
hsa-mir-1207-3p
;
hsa-mir-383-5p
;
hsa-mir-548t-3p
;
hsa-mir-548ap-3p
;
hsa-mir-548aa
;
hsa-mir-4302
;
hsa-mir-6733-3p
;
hsa-mir-5094
;
hsa-mir-7151-5p
;
hsa-mir-4719
;
hsa-mir-4694-3p
;
hsa-mir-27b-3p
;
hsa-mir-27a-3p
;
hsa-mir-513a-5p
;
hsa-mir-153-5p
;
hsa-mir-616-3p
;
hsa-mir-6796-3p
;
hsa-mir-1253
;
hsa-mir-661
;
hsa-mir-939-3p
;
hsa-mir-3154
;
hsa-mir-6892-5p
;
hsa-mir-5011-5p
;
hsa-mir-4475
;
hsa-mir-4422
;
hsa-mir-5579-3p
;
hsa-mir-486-5p
;
hsa-mir-590-5p
;
hsa-mir-21-5p
;
hsa-mir-5089-5p
;
hsa-mir-6807-5p
;
hsa-mir-5589-5p
;
hsa-mir-4731-5p
;
hsa-mir-4252
;
hsa-mir-6506-5p
;
hsa-mir-619-5p
;
hsa-mir-4433b-3p
;
hsa-mir-3130-3p
;
hsa-mir-4684-5p
;
hsa-mir-3190-5p
;
hsa-mir-5699-3p
;
hsa-mir-4421
;
hsa-mir-4485-5p
;
hsa-mir-339-5p
;
hsa-mir-10b-5p
;
hsa-mir-10a-5p
;
hsa-mir-7703
;
hsa-mir-4325
;
hsa-mir-6720-5p
;
hsa-mir-500a-3p
;
hsa-mir-6512-3p
;
hsa-mir-31-5p
;
hsa-mir-6860
;
hsa-mir-612
;
hsa-mir-5189-5p
;
hsa-mir-3187-5p
;
hsa-mir-1285-3p
;
hsa-mir-766-3p
;
hsa-mir-6849-3p
;
hsa-mir-92b-3p
;
hsa-mir-92a-3p
;
hsa-mir-363-3p
;
hsa-mir-367-3p
;
hsa-mir-32-5p
;
hsa-mir-25-3p
;
hsa-mir-190a-3p
;
hsa-mir-506-3p
;
hsa-mir-124-3p
;
hsa-mir-190b
;
hsa-mir-190a-5p
;
hsa-mir-3663-3p
;
hsa-mir-488-5p
;
hsa-mir-6501-3p
;
hsa-mir-500b-3p
;
hsa-mir-380-3p
;
hsa-mir-411-3p
;
hsa-mir-379-3p
;
hsa-mir-502-3p
;
hsa-mir-501-3p
;
hsa-mir-6871-3p
;
hsa-mir-1912
;
hsa-mir-1295b-5p
;
hsa-mir-3910
;
hsa-mir-3714
;
hsa-mir-6859-5p
;
hsa-mir-3125
;
hsa-mir-3916
;
hsa-mir-5585-3p
;
hsa-mir-555
;
hsa-mir-4735-3p
;
hsa-mir-18b-5p
;
hsa-mir-18a-5p
;
hsa-mir-3685
;
hsa-mir-202-3p
;
hsa-mir-98-5p
;
hsa-mir-4500
;
hsa-mir-4458
;
hsa-let-7i-5p
;
hsa-let-7g-5p
;
hsa-let-7f-5p
;
hsa-let-7e-5p
;
hsa-let-7d-5p
;
hsa-let-7c-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-10a-3p
;
hsa-mir-8081
;
hsa-mir-4445-5p
;
hsa-mir-6766-3p
;
hsa-mir-4782-3p
;
hsa-mir-219a-5p
;
hsa-mir-508-3p
;
hsa-mir-571
;
hsa-mir-219a-1-3p
;
hsa-mir-1233-3p
;
hsa-mir-1225-3p
;
hsa-mir-6500-3p
;
hsa-mir-3614-5p
;
hsa-mir-450b-5p
;
hsa-mir-527
;
hsa-mir-518a-5p
;
hsa-mir-4769-5p
;
hsa-mir-4654
;
hsa-mir-4745-5p
;
hsa-mir-4481
;
hsa-mir-549a
;
hsa-mir-325
;
hsa-mir-5586-3p
;
hsa-mir-3923
;
hsa-mir-330-3p
;
hsa-mir-6079
;
hsa-mir-203b-3p
;
hsa-mir-7158-3p
;
hsa-mir-3202
;
hsa-mir-605-3p
;
hsa-mir-890
;
hsa-mir-425-3p
;
hsa-mir-3653-3p
;
hsa-mir-34b-3p
;
hsa-mir-4795-3p
;
hsa-mir-4509
;
hsa-mir-4744
;
hsa-mir-126-5p
;
hsa-mir-656-3p
;
hsa-mir-7161-3p
;
hsa-mir-3924
;
hsa-mir-6512-5p
;
hsa-mir-6077
;
hsa-mir-3679-5p
;
hsa-mir-1185-5p
;
hsa-mir-1277-5p
;
hsa-mir-3117-3p
;
hsa-mir-4257
;
hsa-mir-6847-5p
;
hsa-mir-8083
;
hsa-mir-3169
;
hsa-mir-4759
;
hsa-mir-2681-5p
;
hsa-mir-140-3p
;
hsa-mir-6729-5p
;
hsa-mir-4649-5p
;
hsa-mir-1273a
;
hsa-mir-4486
;
hsa-mir-4793-3p
;
hsa-mir-4267
;
hsa-mir-1273g-3p
;
hsa-mir-548s
;
hsa-mir-223-3p
;
hsa-mir-3165
;
hsa-mir-3926
;
hsa-mir-3656
;
hsa-mir-4786-5p
;
hsa-mir-7162-3p
;
hsa-mir-544b
;
hsa-mir-4277
;
hsa-mir-584-3p
;
hsa-mir-6765-3p
;
hsa-mir-3622b-3p
;
hsa-mir-3622a-3p
;
hsa-mir-887-5p
;
hsa-mir-6780a-5p
;
hsa-mir-6779-5p
;
hsa-mir-3689c
;
hsa-mir-3689b-3p
;
hsa-mir-3689a-3p
;
hsa-mir-30b-3p
;
hsa-mir-1273h-5p
;
hsa-mir-6799-5p
;
hsa-mir-6883-5p
;
hsa-mir-6785-5p
;
hsa-mir-4728-5p
;
hsa-mir-149-3p
;
hsa-mir-7106-5p
;
hsa-mir-665
;
hsa-mir-4768-3p
;
hsa-mir-653-3p
;
hsa-mir-4420
;
hsa-mir-181b-3p
;
hsa-mir-181b-2-3p
;
hsa-mir-6739-5p
;
hsa-mir-6733-5p
;
hsa-mir-3153
;
hsa-mir-4668-5p
;
hsa-mir-6124
;
hsa-mir-676-5p
;
hsa-mir-1236-3p
;
hsa-mir-6515-3p
;
hsa-mir-4737
;
hsa-mir-431-5p
;
hsa-mir-150-5p
;
hsa-mir-6814-5p
;
hsa-mir-3691-3p
;
hsa-mir-1264
;
hsa-mir-548x-3p
;
hsa-mir-548j-3p
;
hsa-mir-548aq-3p
;
hsa-mir-548am-3p
;
hsa-mir-548aj-3p
;
hsa-mir-548ah-3p
;
hsa-mir-548ae-3p
;
hsa-mir-548z
;
hsa-mir-548h-3p
;
hsa-mir-548d-3p
;
hsa-mir-548bb-3p
;
hsa-mir-548ac
;
hsa-mir-1226-5p
;
hsa-mir-4253
;
hsa-mir-4269
;
hsa-mir-4514
;
hsa-mir-4692
;
hsa-mir-4696
;
hsa-mir-4742-5p
;
hsa-mir-4761-3p
;
hsa-mir-6715b-5p
;
hsa-mir-6862-5p
;
hsa-mir-4433a-3p
;
hsa-mir-4459
;
hsa-mir-4793-5p
;
hsa-mir-5196-3p
;
hsa-mir-5694
;
hsa-mir-1228-5p
;
hsa-mir-541-3p
;
hsa-mir-654-5p
;
hsa-mir-7160-5p
Nearest miRNA
hsa-let-7e/Upstream/1902066; hsa-mir-10394/Downstream/1044380;
Nearest TSS
ENST00000633603/Upstream/8421;
ENST00000593427/Downstream/13997;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/9453
,
chr19-CpG: 26/Downstream/27263
Upstream sequence
ggtgggcagatcCcgggtgatccgcctcagcctcccaaaccaaagtgctgggattacaggcatgagccaccatgcctggcctttttttgagatgggtttc
Downstream sequence
cctctgtcacctaggctggagtgcggtggctcagtcttgactcactgcagcctccacctcccaggttcaagcgattctcctgtctcagcctccccagtcg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Resting CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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